Index

A

add_step_param() (nova.galaxy.WorkflowParameters method)

add_workflow_input() (nova.galaxy.WorkflowParameters method) assign_id() (nova.galaxy.Tool method)

B

BasicTool (class in nova.galaxy)

C

cancel() (nova.galaxy.Tool method) (nova.galaxy.Workflow method)

connect() (nova.galaxy.Connection method) Connection (class in nova.galaxy)

D

Dataset (class in nova.galaxy) DatasetCollection (class in nova.galaxy)

Datastore (class in nova.galaxy) download() (nova.galaxy.Dataset method) (nova.galaxy.DatasetCollection method)

G

galaxy_api_key (nova.galaxy.Connection attribute) galaxy_url (nova.galaxy.Connection attribute) get_active_step() (nova.galaxy.Workflow method) get_bioblend_inputs() (nova.galaxy.WorkflowParameters method) get_bioblend_params() (nova.galaxy.WorkflowParameters method) get_content() (nova.galaxy.Dataset method) (nova.galaxy.DatasetCollection method) get_full_status() (nova.galaxy.Tool method) (nova.galaxy.Workflow method) get_invocation_id() (nova.galaxy.Workflow method)

get_results() (nova.galaxy.BasicTool method) (nova.galaxy.Tool method) (nova.galaxy.Workflow method) get_status() (nova.galaxy.Tool method) (nova.galaxy.Workflow method) get_stderr() (nova.galaxy.Tool method) get_stdout() (nova.galaxy.Tool method) get_step_jobs() (nova.galaxy.Workflow method) get_step_name() (nova.galaxy.Workflow method) get_uid() (nova.galaxy.Tool method) get_url() (nova.galaxy.Tool method)

M

mark_for_cleanup() (nova.galaxy.Datastore method)

module nova.galaxy

N

nova.galaxy module

O

Outputs (class in nova.galaxy)

P

Parameters (class in nova.galaxy)

persist() (nova.galaxy.Datastore method) prepare_tool() (nova.galaxy.BasicTool method)

R

recover_tools() (nova.galaxy.Datastore method) run() (nova.galaxy.Tool method) (nova.galaxy.Workflow method)

run_interactive() (nova.galaxy.Tool method)

S

set_content() (nova.galaxy.Dataset method) set_store() (nova.galaxy.BasicTool method)

stop() (nova.galaxy.Tool method) (nova.galaxy.Workflow method)

T

Tool (class in nova.galaxy)

ToolRunner (class in nova.galaxy)

U

upload() (nova.galaxy.Dataset method) (nova.galaxy.DatasetCollection method)

V

validate_for_run() (nova.galaxy.BasicTool method)

W

wait_for_results() (nova.galaxy.Tool method) (nova.galaxy.Workflow method)

Workflow (class in nova.galaxy) WorkflowParameters (class in nova.galaxy)